Plot the pairwise nesting index matrix
Source:R/api-hierarchical-audit.R
plot.mfrm_facet_nesting.RdRenders the directed nesting index \(1 - H(B \mid A)/H(B)\) as a heatmap between facet pairs, highlighting fully nested relationships close to 1. Colour scale runs from 0 (crossed, white / cold) to 1 (fully nested, dark).
Session plot defaults
Set options(mfrmr.plot_preset = "publication") to choose a session default
for plotting functions that expose the common preset argument. The
supported values are "standard", "publication", "compact" and
"monochrome". Precedence is an explicit call argument, then the session
option, then "standard". For example, preset = "standard" overrides
a session set to "monochrome". Explicit preset = NULL retains the
earlier package-default behavior; it does not read the session option.
Invalid session values cause an error only when that option is needed.
The category-curve, data-quality, fit-review, connectivity and network
routes of plot() for report bundles use the same option through ....
Plots without a common preset argument, including extended-model plots
with their own palette controls, keep their own settings. This option
selects a preset, not a universal theme or a guarantee that all renderers
implement every appearance control identically.
New plot payloads retain the resolved preset for supported saved-data
rendering. Converting an existing payload with as_ggplot() uses its saved
appearance, even after the session option changes. A call that creates a
new plot from a fit or statistical result uses the current default.
For a reproducible script, supply preset explicitly or set the option in
that script. Saving only the fitted model does not save a session option.
No global ggplot theme is changed.
Restore previous settings with old <- options(mfrmr.plot_preset = "monochrome") followed by options(old). Use
options(mfrmr.plot_preset = NULL) to remove the option. The preset changes
appearance, not estimates, confidence levels or diagnostic thresholds.